PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g039140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 348aa    MW: 39340.2 Da    PI: 5.4383
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g039140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-17156252296
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +k l++sdv+++gr+vlpk+ ae    +++ +e++ l ++d  s +sW++k+++  ++ks++yvl+ ++ eFv++ng+++gD+++++  ++++++
  Csa17g039140.1 156 VKLLKNSDVGALGRIVLPKREAEGKlpKLSDKEGIVLEMRDvFSLQSWSFKYKFwsNNKSRMYVLE-NTGEFVRQNGVESGDTLTIY--EDESKN 247
                     6899******************99999777778999999995566*******99888888889999.********************..557777 PP

                     .EEEE CS
              B3  92 lvvkv 96 
                     l++ v
  Csa17g039140.1 248 LYFAV 252
                     77765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-20152259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-17154254IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-18154253No hitNo description
PROSITE profilePS508639.812155256IPR003340B3 DNA binding domain
SMARTSM010193.7E-17155256IPR003340B3 DNA binding domain
PfamPF023622.5E-13156251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDNFFPFSSS NANSVQEFAM DANNNLSHLL YSYPMEQMAA VMNPHQPLYS SDAFPQIPVS  60
QPGSEVCSLV SNPNPCLRPE RGGLFLDPTK MARINRKNAM IRSRNNSSPN SSPDEVVESK  120
RQVMMLNMRN NVQIPERKDL YPHSTFDNKK LRVSCVKLLK NSDVGALGRI VLPKREAEGK  180
LPKLSDKEGI VLEMRDVFSL QSWSFKYKFW SNNKSRMYVL ENTGEFVRQN GVESGDTLTI  240
YEDESKNLYF AVTKPGRQNG GRGAKSMEVN ERNHYEEIMY DFMPGDEEEA SIAMLIGNLN  300
DHYPNPNDLM GLTVDHQHYQ AASSLLSVDY AHVGSLDDQV SFDDIVW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478197.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
SwissprotQ1PFR71e-165LEC2_ARATH; B3 domain-containing transcription factor LEC2
TrEMBLR0I4Q70.0R0I4Q7_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.1__2994__AT1G28300.11e-164(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.11e-157B3 family protein